Genome-wide analysis of a TaLEA-introduced transgenic Populus simonii × Populus nigra dwarf mutant.
Identifieur interne : 002A66 ( Main/Exploration ); précédent : 002A65; suivant : 002A67Genome-wide analysis of a TaLEA-introduced transgenic Populus simonii × Populus nigra dwarf mutant.
Auteurs : Hong-Mei Yuan ; Su Chen ; Lin Lin ; Rui Wei ; Hui-Yu Li ; Gui-Feng Liu ; Jing JiangSource :
- International journal of molecular sciences [ 1422-0067 ] ; 2012.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN messager (génétique), ARN messager (métabolisme), Alignement de séquences (MeSH), Chlorophylle (métabolisme), Croisements génétiques (MeSH), Données de séquences moléculaires (MeSH), Facteur de croissance végétal (génétique), Facteurs de transcription (métabolisme), Feuilles de plante (anatomie et histologie), Gènes de plante (MeSH), Génome végétal (génétique), Mutation (génétique), Phénotype (MeSH), Populus (anatomie et histologie), Populus (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Reproductibilité des résultats (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Séquence nucléotidique (MeSH), Tamaricaceae (génétique), Transduction du signal (génétique), Végétaux génétiquement modifiés (MeSH).
- MESH :
- anatomie et histologie : Feuilles de plante, Populus.
- génétique : ADN bactérien, ARN messager, Facteur de croissance végétal, Génome végétal, Mutation, Populus, Protéines végétales, Tamaricaceae, Transduction du signal.
- métabolisme : ARN messager, Chlorophylle, Facteurs de transcription, Protéines végétales.
- Alignement de séquences, Croisements génétiques, Données de séquences moléculaires, Gènes de plante, Phénotype, Reproductibilité des résultats, Régulation de l'expression des gènes végétaux, Séquence nucléotidique, Végétaux génétiquement modifiés.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Chlorophyll (metabolism), Crosses, Genetic (MeSH), DNA, Bacterial (genetics), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genome, Plant (genetics), Molecular Sequence Data (MeSH), Mutation (genetics), Phenotype (MeSH), Plant Growth Regulators (genetics), Plant Leaves (anatomy & histology), Plant Proteins (genetics), Plant Proteins (metabolism), Plants, Genetically Modified (MeSH), Populus (anatomy & histology), Populus (genetics), RNA, Messenger (genetics), RNA, Messenger (metabolism), Reproducibility of Results (MeSH), Sequence Alignment (MeSH), Signal Transduction (genetics), Tamaricaceae (genetics), Transcription Factors (metabolism).
- MESH :
- chemical , genetics : DNA, Bacterial, Plant Growth Regulators, Plant Proteins, RNA, Messenger.
- chemical , metabolism : Chlorophyll, Plant Proteins, RNA, Messenger, Transcription Factors.
- anatomy & histology : Plant Leaves, Populus.
- genetics : Genome, Plant, Mutation, Populus, Signal Transduction, Tamaricaceae.
- Base Sequence, Crosses, Genetic, Gene Expression Regulation, Plant, Genes, Plant, Molecular Sequence Data, Phenotype, Plants, Genetically Modified, Reproducibility of Results, Sequence Alignment.
Abstract
A dwarf mutant (dwf1) was obtained among 15 transgenic lines, when TaLEA (Tamarix androssowii late embryogenesis abundant gene) was introduced into Populus simonii × Populus nigra by Agrobacterium tumefaciens-mediated transformation. Under the same growth conditions, dwf1 height was significantly reduced compared with the wild type and the other transgenic lines. Because only one transgenic line (dwf1) displayed the dwarf phenotype, we considered that T-DNA insertion sites may play a role in the mutant formation. The mechanisms underlying this effect were investigated using TAIL-PCR (thermal asymmetric interlaced PCR) and microarrays methods. According to the TAIL-PCR results, two flanking sequences located on chromosome IV and VIII respectively, were cloned. The results indicated the integration of two independent T-DNA copies. We searched for the potential genes near to the T-DNA insertions. The nearest gene was a putative poplar AP2 transcription factor (GI: 224073210). Expression analysis showed that AP2 was up-regulated in dwf1 compared with the wild type and the other transgenic lines. According to the microarrays results, a total of 537 genes involved in hydrolase, kinase and transcription factor activities, as well as protein and nucleotide binding, showed significant alterations in gene expression. These genes were expressed in more than 60 metabolic pathways, including starch, sucrose, galactose and glycerolipid metabolism and phenylpropanoids and flavonoid biosyntheses. Our transcriptome and T-DNA insertion sites analyses might provide some useful insights into the dwarf mutant formation.
DOI: 10.3390/ijms13032744
PubMed: 22489122
PubMed Central: PMC3317382
Affiliations:
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Lin</name></author><author><name sortKey="Wei, Rui" sort="Wei, Rui" uniqKey="Wei R" first="Rui" last="Wei">Rui Wei</name></author><author><name sortKey="Li, Hui Yu" sort="Li, Hui Yu" uniqKey="Li H" first="Hui-Yu" last="Li">Hui-Yu Li</name></author><author><name sortKey="Liu, Gui Feng" sort="Liu, Gui Feng" uniqKey="Liu G" first="Gui-Feng" last="Liu">Gui-Feng Liu</name></author><author><name sortKey="Jiang, Jing" sort="Jiang, Jing" uniqKey="Jiang J" first="Jing" last="Jiang">Jing Jiang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22489122</idno><idno type="pmid">22489122</idno><idno type="doi">10.3390/ijms13032744</idno><idno type="pmc">PMC3317382</idno><idno type="wicri:Area/Main/Corpus">002A84</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002A84</idno><idno type="wicri:Area/Main/Curation">002A84</idno><idno type="wicri:explorRef" 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végétaux</term><term>Séquence nucléotidique</term><term>Végétaux génétiquement modifiés</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A dwarf mutant (dwf1) was obtained among 15 transgenic lines, when TaLEA (Tamarix androssowii late embryogenesis abundant gene) was introduced into Populus simonii × Populus nigra by Agrobacterium tumefaciens-mediated transformation. Under the same growth conditions, dwf1 height was significantly reduced compared with the wild type and the other transgenic lines. Because only one transgenic line (dwf1) displayed the dwarf phenotype, we considered that T-DNA insertion sites may play a role in the mutant formation. The mechanisms underlying this effect were investigated using TAIL-PCR (thermal asymmetric interlaced PCR) and microarrays methods. According to the TAIL-PCR results, two flanking sequences located on chromosome IV and VIII respectively, were cloned. The results indicated the integration of two independent T-DNA copies. We searched for the potential genes near to the T-DNA insertions. The nearest gene was a putative poplar AP2 transcription factor (GI: 224073210). Expression analysis showed that AP2 was up-regulated in dwf1 compared with the wild type and the other transgenic lines. According to the microarrays results, a total of 537 genes involved in hydrolase, kinase and transcription factor activities, as well as protein and nucleotide binding, showed significant alterations in gene expression. These genes were expressed in more than 60 metabolic pathways, including starch, sucrose, galactose and glycerolipid metabolism and phenylpropanoids and flavonoid biosyntheses. Our transcriptome and T-DNA insertion sites analyses might provide some useful insights into the dwarf mutant formation.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22489122</PMID><DateCompleted><Year>2015</Year><Month>07</Month><Day>06</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1422-0067</ISSN><JournalIssue CitedMedium="Internet"><Volume>13</Volume><Issue>3</Issue><PubDate><Year>2012</Year></PubDate></JournalIssue><Title>International journal of molecular sciences</Title><ISOAbbreviation>Int J Mol Sci</ISOAbbreviation></Journal><ArticleTitle>Genome-wide analysis of a TaLEA-introduced transgenic Populus simonii × Populus nigra dwarf mutant.</ArticleTitle><Pagination><MedlinePgn>2744-62</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3390/ijms13032744</ELocationID><Abstract><AbstractText>A dwarf mutant (dwf1) was obtained among 15 transgenic lines, when TaLEA (Tamarix androssowii late embryogenesis abundant gene) was introduced into Populus simonii × Populus nigra by Agrobacterium tumefaciens-mediated transformation. Under the same growth conditions, dwf1 height was significantly reduced compared with the wild type and the other transgenic lines. Because only one transgenic line (dwf1) displayed the dwarf phenotype, we considered that T-DNA insertion sites may play a role in the mutant formation. The mechanisms underlying this effect were investigated using TAIL-PCR (thermal asymmetric interlaced PCR) and microarrays methods. According to the TAIL-PCR results, two flanking sequences located on chromosome IV and VIII respectively, were cloned. The results indicated the integration of two independent T-DNA copies. We searched for the potential genes near to the T-DNA insertions. The nearest gene was a putative poplar AP2 transcription factor (GI: 224073210). Expression analysis showed that AP2 was up-regulated in dwf1 compared with the wild type and the other transgenic lines. According to the microarrays results, a total of 537 genes involved in hydrolase, kinase and transcription factor activities, as well as protein and nucleotide binding, showed significant alterations in gene expression. These genes were expressed in more than 60 metabolic pathways, including starch, sucrose, galactose and glycerolipid metabolism and phenylpropanoids and flavonoid biosyntheses. Our transcriptome and T-DNA insertion sites analyses might provide some useful insights into the dwarf mutant formation.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yuan</LastName><ForeName>Hong-Mei</ForeName><Initials>HM</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China; E-Mails: chensunefu@163.com (S.C.); yuanhm1979@163.com (H.-M.Y.); linlin198212@126.com (L.L.); wrrachel@yahoo.com.cn (R.W.); 44919635@qq.com (H.-Y.L.); liuguifeng@126.com (G.-F.L.).</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Su</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Lin</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Wei</LastName><ForeName>Rui</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Hui-Yu</ForeName><Initials>HY</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Gui-Feng</ForeName><Initials>GF</Initials></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Jing</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>03</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Int J Mol Sci</MedlineTA><NlmUniqueID>101092791</NlmUniqueID><ISSNLinking>1422-0067</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010937">Plant Growth Regulators</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C036483">T-DNA</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C066246">late embryogenesis abundant protein, plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>1406-65-1</RegistryNumber><NameOfSubstance UI="D002734">Chlorophyll</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002734" MajorTopicYN="N">Chlorophyll</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003433" MajorTopicYN="Y">Crosses, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009154" MajorTopicYN="N">Mutation</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010937" MajorTopicYN="N">Plant Growth Regulators</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000033" MajorTopicYN="N">anatomy & histology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000033" MajorTopicYN="Y">anatomy & histology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015398" MajorTopicYN="N">Signal Transduction</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032363" MajorTopicYN="N">Tamaricaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">AP2</Keyword><Keyword MajorTopicYN="N">RAV</Keyword><Keyword MajorTopicYN="N">dwarf</Keyword><Keyword MajorTopicYN="N">microarrays</Keyword><Keyword MajorTopicYN="N">mutant</Keyword><Keyword MajorTopicYN="N">poplar</Keyword></KeywordList><GeneralNote Owner="NLM">Original DateCompleted: 20130704</GeneralNote></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2011</Year><Month>10</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2011</Year><Month>11</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2012</Year><Month>02</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>4</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>4</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>4</Month><Day>11</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22489122</ArticleId><ArticleId IdType="doi">10.3390/ijms13032744</ArticleId><ArticleId IdType="pii">ijms-13-02744</ArticleId><ArticleId IdType="pmc">PMC3317382</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Tree Physiol. 2005 Oct;25(10):1273-81</Citation><ArticleIdList><ArticleId IdType="pubmed">16076776</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Signal Behav. 2010 Nov;5(11):1440-1</Citation><ArticleIdList><ArticleId 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IdType="pubmed">18643985</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list></list><tree><noCountry><name sortKey="Chen, Su" sort="Chen, Su" uniqKey="Chen S" first="Su" last="Chen">Su Chen</name><name sortKey="Jiang, Jing" sort="Jiang, Jing" uniqKey="Jiang J" first="Jing" last="Jiang">Jing Jiang</name><name sortKey="Li, Hui Yu" sort="Li, Hui Yu" uniqKey="Li H" first="Hui-Yu" last="Li">Hui-Yu Li</name><name sortKey="Lin, Lin" sort="Lin, Lin" uniqKey="Lin L" first="Lin" last="Lin">Lin Lin</name><name sortKey="Liu, Gui Feng" sort="Liu, Gui Feng" uniqKey="Liu G" first="Gui-Feng" last="Liu">Gui-Feng Liu</name><name sortKey="Wei, Rui" sort="Wei, Rui" uniqKey="Wei R" first="Rui" last="Wei">Rui Wei</name><name sortKey="Yuan, Hong Mei" sort="Yuan, Hong Mei" uniqKey="Yuan H" first="Hong-Mei" last="Yuan">Hong-Mei Yuan</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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